Publications

1. Abby V McGee, Yanjing V Liu, Audrey L Griffith, Zsofia M Szegletes, Bronte Wen, Carolyn Kraus, Nathan W Miller, Ryan J Steger, Berta Escude Velasco, Justin A. Bosch, Jonathan D Zirin, Raghuvir Viswanatha, Erik J Sontheimer, Amy Goodale, Matthew A Greene, Thomas M Green, John G Doench. Modular vector assembly enables rapid assessment of emerging CRISPR technologies. bioRxiv 2023.10.25.564061; doi: https://doi.org/10.1101/2023.10.25.564061 Accepted at Cell Genomics.

1. Jonathan Zirin, Barbara Jusiak, Raphael Lopes, Ben Ewen-Campen, Justin A. Bosch, Christians Villalta, Corey Forman, Yanhui Hu, Stephanie Mohr, Norbert Perrimon (2023). Expanding the Drosophila toolkit for dual control of gene expression. eLife 12:RP94073 [link]

1. Justin A. Bosch, Keith N, Escobedo F, Fisher WW, LaGraff JT, Rabasco J, Wan KH, Weiszmann R, Hu Y, Kondo S, Brown JB, Perrimon N, Celniker SE. Molecular and functional characterization of the Drosophila melanogaster conserved smORFome. Cell Rep. 2023 doi: 10.1016/j.celrep.2023.113311. PMID: 37889754. [link]

1. Justin A. Bosch, Berrak Ugur, Israel Pichardo-Casas, Jorden Rabasco, Felipe Escobedo, Zhongyuan Zuo, Ben Brown, Susan Celniker, David Sinclair, Hugo Bellen, and Norbert Perrimon. (2022) Two neuronal peptides encoded from a single transcript regulate mitochondrial complex III in Drosophila. Elife. 2022 Nov 8;11:e82709. PMID: 36346220 [link]

1. Justin A. Bosch, Perrimon N. (2022) Prime Editing for Precise Genome Engineering in Drosophila. Methods in Molecular Biology. 2540:113-134. PMID: 35980575 [link]

1. Jonathan Zirin, Justin A. Bosch, Raghuvir Viswanatha, Stephanie E Mohr, Norbert Perrimon. (2021) State-of-the-art CRISPR for in vivo and cell-based studies in Drosophila. Trends in Genetics. May;38(5):437-453. PMID: 34933779 [link]

1. Droujinine IA, Meyer AS, Wang D, Udeshi ND, Hu Y, Rocco D, McMahon JA, Yang R, Guo J, Mu L, Carey DK, Svinkina T, Zeng R, Branon T, Tabatabai A, Justin A. Bosch, Asara JM, Ting AY, Carr SA, McMahon AP, Perrimon N. (2021) Proteomics of protein trafficking by in vivo tissue-specific labeling. Nature Communications. Apr 22;12(1):2382. PMID: 33888706 [link]

1. Justin A. Bosch, Gabriel Birchak, Norbert Perrimon. (2021) Precise genome engineering in Drosophila using prime editing. Proceedings of the National Academy of Sciences. Jan 5;118(1):e2021996118. PMID: 33443210 [link]

1. Justin A. Bosch, Chiao-Lin Chen, and Norbert Perrimon. (2021) Proximity-dependent labeling methods for proteomic profiling in living cells: An update. Wiley Interdisciplinary Reviews: Developmental Biology. Jan;10(1):e392. PMID: 32909689 [link]

1. Chiwei Xu, Yannik Regimbald-Dumas, Brian Franklin, Yanhui Hu, Justine Ramos, Justin A. Bosch, Xi He, Norbert Perrimon. (2020) An in vivo RNAi screen uncovers the role of AdoR signaling and adenosine deaminase in controlling intestinal stem cell activity. Proceedings of the National Academy of Sciences. Jan 7;117(1):464-471. PMID: 31852821 [link]

1. Justin A. Bosch, Shannon Knight, Oguz Kanca, Jonathan Zirin, Donghui Yang-Zhou, Yanhui Hu, Jonathan Rodiger, Gabriel Amador, Hugo J. Bellen, Norbert Perrimon, Stephanie E. Mohr. (2020) Use of the CRISPR-Cas9 system to introduce fluorescent tags into endogenous genes in Drosophila cultured cells. Current Protocols in Molecular Biology. Mar;130(1):e112. PMID: 31869524 [link]

1. Justin A. Bosch, Ryan Colbeth, Jonathan Zirin, Norbert Perrimon. (2020) Gene knock-ins in Drosophila using homology-independent insertion of universal donor plasmids. Genetics. Jan;214(1):75-89. PMID: 31685521 [link]

1. Taryn M Sumabat, Melanie I Worley, Brett J Pellock, Justin A. Bosch, Iswar K Hariharan. (2019) “The transcriptional co-repressor CtBP is a negative regulator of growth that antagonizes the Yorkie and JNK/AP-1 pathways” Online at bioRxiv. https://www.biorxiv.org/content/10.1101/772533v1

1. Tess C Branon, Justin A Bosch, Ariana D Sanchez, Namrata D Udeshi, Tanya Svinkina, Steven A Carr, Jessica L Feldman, Norbert Perrimon, Alice Y Ting. (2018) Directed evolution of TurboID for efficient proximity labeling in living cells and organisms. Nature Biotechnology. Oct;36(9):880-887. PMID: 30125270 [link]

1. Justin A. Bosch, Taryn M. Sumabat, and Iswar K. Hariharan. (2016) Persistence of RNAi-Mediated Knockdown in Drosophila Complicates Mosaic Analysis yet Enables Highly Sensitive Lineage Tracing. Genetics. May;203(1):109-18. PMID: 26984059 [link]

1. Justin A. Bosch, Ngoc Han Tran and Iswar K. Hariharan. (2015) CoinFLP: A system for efficient mosaic screening and for visualizing clonal boundaries in Drosophila. Development. Feb 1;142(3):597-606. PMID: 25605786 [link]

1. Justin A. Bosch, Taryn M. Sumabat, Yassi Hafezi, Brett J, Pellock, Kevin D. Gandhi and Iswar K. Hariharan. (2014) The Drosophila F-box protein Fbxl7 binds to the protocadherin fat and regulates Dachs localization and Hippo signaling. eLife. Aug 8;3:e03383. PMID: 25107277 [link]

1. Anderson, R. M., Delous, M., Justin A. Bosch, Ye, L., Robertson, M. A., Hesselson, D., & Stainier, D. Y. R. (2013) Hepatocyte growth factor signaling in intrapancreatic ductal cells drives pancreatic morphogenesis. PLoS Genetics. 2013;9(7):e1003650. PMID: 23935514 [link]

1. Hafezi, Y., Justin A. Bosch, & Hariharan, I. K. (2012) Differences in levels of the transmembrane protein Crumbs can influence cell survival at clonal boundaries. Developmental Biology. Aug 15;368(2):358-69. PMID: 22683826 [link]

1. Rachel K Tittle, Ryan Sze, Anthony Ng, Richard J Nuckels, Mary E Swartz, Ryan M Anderson, Justin A. Bosch, Didier Y R Stainier, Johann K Eberhart, and Jeffrey M Gross. (2011) Uhrf1 and Dnmt1 are required for development and maintenance of the zebrafish lens. Developmental Biology. Feb 1;350(1):50-63. PMID: 21126517 [link]

1. Ryan M Anderson, Justin A. Bosch, Mary G Goll, Daniel Hesselson, P Duc Si Dong, Donghun Shin, Neil C Chi, Chong Hyun Shin, Amnon Schlegel, Marnie Halpern, and Didier Y R Stainier. (2009) Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration. Developmental Biology. Oct 1;334(1):213-23. PMID: 19631206 [link]

1. Justin A. Bosch, Kweon Heo, Marek K Sliwinski, and David A Baum. (2008) An exploration of LEAFY expression in independent evolutionary origins of rosette flowering in Brassicaceae. American Journal of Botany. Mar;95(3):286-93. PMID: 21632353 [link]

1. Marek K Sliwinski, Justin A. Bosch, Ho-Sung Yoon, Maria von Balthazar, and David A Baum. (2007) The role of two LEAFY paralogs from Idahoa scapigera (Brassicaceae) in the evolution of a derived plant architecture. The Plant Journal. Jul;51(2):211-9. PMID: 17559504 [link]